WebObs is an integrated web-based system for data monitoring and networks management. Seismological and volcanological observatories have common needs and often common practical problems for multi disciplinary data monitoring applications. In fact, access to integrated data in real-time and estimation of uncertainties are keys for an efficient interpretation, but instruments variety, heterogeneity of data sampling and acquisition systems lead to difficulties that may hinder crisis management. In the Guadeloupe observatory, we have developed in the last 15 years an operational system that attempts to answer the questions in the context of a pluri-instrumental observatory. Based on a single computer server, open source scripts (with few free binaries) and a Web interface, the system proposes:
- an extended database for networks management, stations and sensors (maps, station file with log history, technical characteristics, meta-data, photos and associated documents);
- a web-form interfaces for manual data input/editing and export (like geochemical analysis, some of the deformation measurements, …);
routine data processing with dedicated automatic scripts for each technique, production of validated data outputs, static graphs on preset moving time intervals, possible e-mail alarms, sensors and station status based on data validity;
- in the special case of seismology, a multichannel continuous stripchart associated with EarthWorm/SeisComP acquisition chain, event classification database, automatic shakemap reports, regional catalog with associated hypocenter maps.
WebObs is presently fully functional and used in a dozen observatories (see the related publications) and was awarded in 2022, but the documentation for end users is still incomplete and there is no tutorial. We hope to shortly finish the main user’s manual. If you are in a hurry, please contact the project coordinator and we will be happy to help you to install it. WebObs is fully described in the following paper (please cite this one if you publish something using WebObs):
Beauducel F., D. Lafon, X. Béguin, J.-M. Saurel, A. Bosson, D. Mallarino, P. Boissier, C. Brunet, A. Lemarchand, C. Anténor-Habazac, A. Nercessian, A. A. Fahmi (2020). WebObs: The volcano observatories missing link between research and real-time monitoring, Frontiers in Earth Sciences, doi:10.3389/feart.2020.00048.
Download the latest release
For install and update, please follow instructions below.
IMPORTANT: when upgrading from a previous version, please read carefully the information at the end of the procedure: some updates may require changes in your configuration files.
Source code, comments and issues are available at the project repository github.com/IPGP/webobs.
Installation / upgrading
To run WebObs you need to install the package which contains a setup script that will set all configuration files. Installing WebObs is not a classical compilation from sources with ‘make’. A part of it requires the free Matlab runtime library because package contains some compiled binaries for optimization purpose.
A) Installing WebObs <version> from its WebObs-<version>.tgz
You create/choose your WebObs directory within which you will execute the setup process. We suggest /opt/webobs
(default). This directory will contain both
WebObs code and WebObs data, and will be the DocumentRoot of the WebObs Apache’s Virtual Host.
setup will prompt you for a Linux WebObs userid (aka WebObs Owner) that it will create. The WebObs userid’s group will also be added to Apache’s user. See the WebObs user manual if you need to create your own WebObs owner.
The system-wide /etc/webobs.d symbolic link will identify your WebObs ‘active’ (production) installation.
WebObs comes with pre-defined configuration files and pre-defined data objects as a starting point and for demonstration purposes.
Prerequisities
Graph processes need Matlab compiler runtime 2011b (available above). Download the installer adapted to your architecture in the WebObs directory, the setup will install it during the C) procedure. Or, place it in any local directory then run:
unzip MCR_<version>_installer.zip
sudo ./install -mode silent
A number of programs and Perl modules are needed to run webobs. During the C) installation procedure, setup will list the missing dependencies that must be installed. Under Debian/Ubuntu, you might install them using the following packages:
sudo apt install apache2 apache2-utils sqlite3 imagemagick pngquant qrencode jq vim mutt xvfb \
curl gawk graphviz net-tools libdatetime-perl libdatetime-format-strptime-perl libdate-calc-perl \
libcgi-session-perl libdbd-sqlite3-perl libgraphviz-perl libimage-info-perl \
libtext-multimarkdown-perl libswitch-perl libintl-perl liblist-moreutils-perl \
wkhtmltopdf poppler-utils libjson-perl libjson-xs-perl libnet-ldap-perl libhtml-escape-perl
sudo apt install libncurses5
sudo apt install python-is-python3
Compiled binaries are using some ISO-8859-1 encoding characters… to get correct display you might install some additional locale. Uncomment fr_FR ISO-8859-1
and en_US ISO-8859-1
lines in /etc/locale.gen
, then:
sudo locale-gen fr_FR en_US
Also you need to activate CGI module for Apache:
Create the target WebObs directory:
sudo mkdir -p /opt/webobs
Create the webobs user:
B) Upgrading WebObs <version> from its WebObs-<version>.tgz
The setup process is also used for upgrading an already installed WebObs.
setup
, when ‘upgrading’ will activate new WebObs code AND only report the data/configuration differences that it can detect between your customized installation and what the new version would installed from scratch.
It is recommended to stop any WebObs-related processes before upgrading.
Configuration files will be updaded and displayed/editabled at the end of the upgrade process to help you apply required changes to configuration/data.
C) Procedure for both A) and B) above
In your target WebObs directory with root privileges:
cd /opt/webobs
sudo tar xf <download_directory>/WebObs-<version>.tar.gz
sudo WebObs-<version>/SETUP/setup
Then (re)start Apache (for example sudo service apache2 restart
) and launch the scheduler and postboard. For users of systemd-base GNU/Linux distributions, the setup
proposes an automatic installation for scheduler and the postboard services. If you accepted it, you can launch both systemd services with the following commands:
sudo service woscheduler start
sudo service wopostboard start
D) Improving basemap database (recommanded)
WebObs is distributed with ETOPO5 worldwide topographic data, which is very coarse. For details maps on land, WebObs uses SRTM3 topographic data, automatically downloaded from the internet. To improve offshore parts of maps, you can freely download ETOPO1:
curl https://www.ngdc.noaa.gov/mgg/global/relief/ETOPO1/data/bedrock/grid_registered/binary/etopo1_bed_g_i2.zip -o /tmp/etopo.zip
unzip -d /etc/webobs.d/../DATA/DEM/ETOPO /tmp/etopo.zip
If the link is broken you might download a copy here (308 Mb) and untar into the WebObs root directory:
then update the ETOPO parameters in the /etc/webobs.d/WEBOBS.rc
file with the lines:
ETOPO_NAME|etopo1_bed_g_i2
ETOPO_COPYRIGHT|DEM: ETOPO1 NGDC/NOOA
What’s new and release history
What’s new in the 2.7?
- first effort of generic form for manual database management (under development);
- better security checking in user authentication and script access;
- improvement in DSV data format;
- new button to duplicate a node;
- content of cross link node features displayed;
- proc request form shows all variables;
- new interface for publishing B3 reports;
- finalization of the interface between WebObs and the Theia|OZCAR data portal;
- new format for calibration files;
- some minor to moderate fixes and other minor improvements.
What’s new in the 2.6?
- first effort for an interface between WebObs and the Theia|OZCAR data portal;
- node form has interactive map for manual/automatic location and import of a shapefile;
- node calibration file accepts many arithmetic formula (not only linear);
- new functionalities in superproc GNSS (baselines outputs, node selection from target for all summary graphs);
- job selection in scheduler runs (display);
- improved Campbell data format (non-standard directory);
- improved performance of Sefran3 with large amount of events;
- new moving average graphs in seismc MC;
- some fixes and other minor improvements.
What’s new in the 2.5?
- SEFRAN3/MC3 can use key shortcuts to select the event type and amplitude;
- new functionalities in superproc GNSS (harmonic correction, velocity scale) and GENPLOT (moving averages), node events are plotted in background for pernode graphs (most superprocs);
- external node maps now use OpenStreetMaps with various free tile layers (satellite, terrain, topo, …);
- neighbour nodes are automatically displayed with dynamic links;
- QR codes available for all grids, output graphs and nodes pages (link to direct URL);
- node-feature-node association editable through node configuration GUI;
- improved node events search tool;
- some fixes and other minor improvements.
What’s new in the 2.4?
- SEFRAN3/MC3 includes a machine learning module for automatic event classification;
- new forms for soil solution and rain water chemical analysis;
- new modelling capabilities (pCDM MODELTIME) in GNSS superproc;
- Sefran3 is now a grid type associated to a domain, with configuration GUI;
- some fixes and other minor improvements.
What’s new in the 2.3?
- nodes have one different calibration file per associated proc;
- new modelling capabilities, and new network sensitivity 3D maps in GNSS superproc;
- new parameters in DSV data superformat;
- improved proc access and maps display in showGRID;
- new CSS classes;
- Sefran3 accepts data flux from Winston server;
- some fixes and other minor improvements.
What’s new in the 2.2?
- Sefran3 has a continuous multichannel spectrogram, and compressed PNG images (by 70%);
- new default colormaps (ryb, spectral) for all procs;
- security update, improvements and fixes in all existing superprocs.
What’s new in the 2.1?
- GNSS superproc has new features (improved graphic and modelling capabilities);
- Sefran3 has now signal filtering possibility (lowpass, highpass, bandpass);
- additional parameters for node’s events (link to feature or channel, sensor/data outcome, …);
- new search tool for node’s events;
- new superproc mc3stats to make statistics on seismic events;
- all background maps can merge SRTM and ETOPO;
- domains are editable through GUI;
- security update, improvements and fixes in all existing superprocs.
What’s new in the 2.0?
- source code is now on github!
- smarter setup to automatically update configuration files;
- auto-registration for new users;
- scheduler kill job command;
- improvements and fixes in all existing superprocs.
What’s new in the beta-1.8?
- a security fix in woc;
- new data format EarthWorm Winston Wave Server;
- new superproc “RSAM” plotting timeseries and source location maps;
- new superproc “SARA” plotting seismic amplitude ratio analysis;
- channel selection in each NODE for associated PROCS;
- new timescale with a reference date;
- PROCS graph outputs have a new default page “overview” with thumbnails;
- events in time series background have now a pop-up window with event name;
- improvements and fixes in all existing superprocs.
What’s new in the beta-1.7 ?
- a major update of Hebdo: the Gazette!
- superproc “GENPLOT” improved with a lot of new parameters;
- new superproc “HYPOMAP” plotting earthquake maps from different data sources (HYPO71 catalog file, FDNS WebService, QuakeML events tree, …);
- new superproc “TREMBLEMAPS” producing elaborated earthquake bulletins for felt events;
- new superproc “EXTENSO” plotting timeseries and maps from extensometer manual data (FORM);
- new superproc “NAQSSOHPLOT” plotting timeseries of NAQS metadata stations;
- new superproc “TILT” plotting timeseries, vectors and modelling tiltmeter data;
- new superproc “HELICORDER” plotting nice helicorders from seismic data;
- plots lines of transmission between NODES on location maps (GRID and NODE);
- possibility to add supplementary maps with user-defined area limits (GRID);
- export links of NODE’s list in text (TXT), Excel-compatible (CSV) or Google-Earth (KML) formats;
- define a list of PROC’s parameter keys that will be editable in the request data form;
- upload/associate photos to a NODE event or sub-event;
- multiple photos/files upload to a NODE;
- quick access link to previous/next photo associated to a NODE;
- photos associated to a NODE are now sorted in chronological order (timestamp from EXIF data);
- improvements and fixes to superprocs SEFRAN3, GENPLOT, GNSS, JERK, METEO.
Awards
The WebObs system has been awarded by a “Community” accessit during the First Open Science Award Ceremony, Paris Open Science European Conference (OSEC), February 4-5, 2022. See related articles (mostly in French):
References
search citing articles in Google Scholar
Publications on the WebObs system
- Beauducel, F. and C. Anténor-Habazac (2002), Quelques éléments d’une surveillance opérationnelle…, Journées des Observatoires Volcanologiques, Institut de Physique du Globe de Paris, 25 janvier 2002. PDF (in French)
- Beauducel, F., Anténor-Habazac, C., & Mallarino, D. (2004). WEBOVS: Integrated monitoring system interface for volcano observatories. IAVCEI General Assembly, Pucon, Chile, November 2004, poster. PDF
- Beauducel, F. (2006). Operational monitoring of French volcanoes: Recent advances in Guadeloupe, Géosciences, Editions BRGM, n°4, p 64-68, 2006. Abstract
- Beauducel, F., A. Bosson, F. Randriamora, C. Anténor-Habazac, A. Lemarchand, J-M Saurel, A. Nercessian, M-P Bouin, J-B de Chabalier, V. Clouard (2010). Recent advances in the Lesser Antilles observatories - Part 2 - WEBOBS: an integrated web-based system for monitoring and networks management, Paper presented at European Geosciences Union General Assembly, Vienna, 2-7 May 2010. Abstract
- Beauducel F., D. Lafon, X. Béguin, J.-M. Saurel, A. Bosson, D. Mallarino, P. Boissier, C. Brunet, A. Lemarchand, C. Anténor-Habazac, A. Nercessian, A. A. Fahmi (2020), WebObs: The volcano observatories missing link between research and real-time monitoring, Frontiers in Earth Sciences, Open Access Full Article
Publications citing or using data from WebObs
Multidisciplinary
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- Boudoire G. et al. (2018). Extensive CO2 degassing in the upper mantle beneath ocean basaltic volcanoes: first insights from Piton de la Fournaise volcano (La Réunion Island) coupling CO2 He-Ar systematic and petrology of fluid inclusions. Geochimica et Cosmochimica Acta, doi:10.1016/j.gca.2018.06.004
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- REVOSIMA (2019). Bulletin de L’Activité Sismo-Volcanique à Mayotte. Technical Report ISSN: 2680-1205, IPGP/BRGM. Available online at www.ipgp.fr/revosima
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- Terray L. (2020). From sensor to cloud: An IoT network of radon outdoor probes to monitor active volcanoes. Sensors, doi:10.3390/s20102755
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- Trasatti, E. et al. (2021). The Impact of Open Science for Evaluation of Volcanic Hazards. Frontiers in Earth Science, doi:10.3389/feart.2021.659772.
- Lowenstern, J. B., Wallace, K., Barsotti, S., Sandri, L., Stovall, W., Bernard, B., … & Garaebiti, E. (2022). Guidelines for volcano-observatory operations during crises: recommendations from the 2019 volcano observatory best practices meeting. Journal of Applied Volcanology, 11(1), 1-24. doi:10.1186/s13617-021-00112-9
- Chevrel, M. O., Harris, A., Peltier, A., Villeneuve, N., Coppola, D., Gouhier, M., & Drenne, S. (2022). Volcanic crisis management supported by near real-time lava flow hazard assessment at Piton de la Fournaise, La Réunion. Volcanica, 5(2), 313-334. doi:10.30909/vol.05.02.313334
- Barsotti, S., Scollo, S., Macedonio, G., Felpeto, A., Peltier, A., Vougioukalakis, G., … & Salerno, G. (2024). The European Volcano Observatories and their use of the aviation colour code system. Bulletin of Volcanology, 86(3), 23.
- Chevrel, O. (2024). Contribution to the understanding of lava flow emplacement dynamics. Doctoral dissertation, Université Clermont Auvergne (UCA).
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Seismology
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le système hydrothermal, Doctorate Thesis, Université Paris Diderot, October 2015, pp. 235.
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Critical Zone
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